rs8239758 SNP Detail

Summary

• ID
  rs8239758
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46140713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                 T AACCTAACAT GGGTCTCCCC TCCATNCCCA
  GGGAGCCAGG CTTGGCACGT ATGGCAGCAA GATGAACCCC AGTCCCAATG GGACAAAGTG
  AAGGATTTCG CTAATGTGTA TGTGGATGCG GTCAAAGACA GCGGCAGAGA CTATGTGTCC
  CAGTTTGAAT CCTCCTCCTT GGGCCAACAG CTGAAGTAAG GAAAGACCTA GCGTGGGGCC
  TGGAGCAGGT CAAGGGCTGC CCATCCAGGG TGGGCAGAGA GACCAGTGAG AAGATGCTGG
  AACTGAGCTG GCTAGCCCTT CACGGGCTTT CCTACCAGCT GGGCACCATG GCAGGTTCCA
  R
  TGGAGGACNA GGGATNGGAT TCATCTGGCT GTTGGGTAAC CACAGCCCCT CATTCAGCCT
  ATGAGTGCCA AATCCCTTTT CCTTGGTAAC CCCCAGTACT GGTCAGACAG CNCC      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ
ss12734334	L04149_DA284_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ
rs8239758					SNP	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46140713 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	531 bp proximal
Gm67994	predicted gene, 67994	1118 bp downstream
Rr195182	regulatory region 195182	513 bp distal
Rr195183	regulatory region 195183	88 bp proximal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1041 bp downstream
Tssr84840	transcription start site region 84840	701 bp downstream
Tssr84841	transcription start site region 84841	571 bp downstream
Tssr84842	transcription start site region 84842	469 bp downstream
Tssr84843	transcription start site region 84843	435 bp downstream
Tssr84844	transcription start site region 84844	261 bp downstream
Tssr84845	transcription start site region 84845	224 bp downstream
Tssr84846	transcription start site region 84846	169 bp downstream
Tssr84847	transcription start site region 84847	407 bp upstream
Tssr84848	transcription start site region 84848	494 bp upstream
Tssr84849	transcription start site region 84849	586 bp upstream
Tssr84850	transcription start site region 84850	626 bp upstream
Tssr84851	transcription start site region 84851	670 bp upstream
Tssr84852	transcription start site region 84852	689 bp upstream
Tssr84853	transcription start site region 84853	787 bp upstream
Tssr84854	transcription start site region 84854	817 bp upstream
Tssr84855	transcription start site region 84855	836 bp upstream
Tssr84856	transcription start site region 84856	852 bp upstream
Tssr84857	transcription start site region 84857	970 bp upstream
Tssr84858	transcription start site region 84858	989 bp upstream
Tssr89313	transcription start site region 89313	519 bp downstream
Tssr89314	transcription start site region 89314	579 bp downstream
Tssr89315	transcription start site region 89315	593 bp downstream
Tssr89316	transcription start site region 89316	621 bp downstream
Tssr89317	transcription start site region 89317	633 bp downstream
Tssr89318	transcription start site region 89318	655 bp downstream
Tssr89319	transcription start site region 89319	669 bp downstream
Tssr89320	transcription start site region 89320	678 bp downstream
Tssr89321	transcription start site region 89321	700 bp downstream
Tssr89322	transcription start site region 89322	746 bp downstream
Tssr89323	transcription start site region 89323	811 bp downstream
Tssr89324	transcription start site region 89324	861 bp downstream
Tssr89325	transcription start site region 89325	885 bp downstream
Tssr89326	transcription start site region 89326	925 bp downstream
Tssr89327	transcription start site region 89327	1046 bp downstream