rs8239759 SNP Detail

Summary

• ID
  rs8239759
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46140722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACCTAACA TGGGTCTCCC CTCCATNCCC AGGGAGCCAG
  GCTTGGCACG TATGGCAGCA AGATGAACCC CAGTCCCAAT GGGACAAAGT GAAGGATTTC
  GCTAATGTGT ATGTGGATGC GGTCAAAGAC AGCGGCAGAG ACTATGTGTC CCAGTTTGAA
  TCCTCCTCCT TGGGCCAACA GCTGAAGTAA GGAAAGACCT AGCGTGGGGC CTGGAGCAGG
  TCAAGGGCTG CCCATCCAGG GTGGGCAGAG AGACCAGTGA GAAGATGCTG GAACTGAGCT
  GGCTAGCCCT TCACGGGCTT TCCTACCAGC TGGGCACCAT GGCAGGTTCC ANTGGAGGAC
  W
  AGGGATNGGA TTCATCTGGC TGTTGGGTAA CCACAGCCCC TCATTCAGCC TATGAGTGCC
  AAATCCCTTT TCCTTGGTAA CCCCCAGTAC TGGTCAGACA GCNCC                
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J
ss12734335	L04149_DA284_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J
rs8239759					SNP	T	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46140722 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	522 bp proximal
Gm67994	predicted gene, 67994	1127 bp downstream
Rr195182	regulatory region 195182	522 bp distal
Rr195183	regulatory region 195183	79 bp proximal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1050 bp downstream
Tssr84840	transcription start site region 84840	710 bp downstream
Tssr84841	transcription start site region 84841	580 bp downstream
Tssr84842	transcription start site region 84842	478 bp downstream
Tssr84843	transcription start site region 84843	444 bp downstream
Tssr84844	transcription start site region 84844	270 bp downstream
Tssr84845	transcription start site region 84845	233 bp downstream
Tssr84846	transcription start site region 84846	178 bp downstream
Tssr84847	transcription start site region 84847	398 bp upstream
Tssr84848	transcription start site region 84848	485 bp upstream
Tssr84849	transcription start site region 84849	577 bp upstream
Tssr84850	transcription start site region 84850	617 bp upstream
Tssr84851	transcription start site region 84851	661 bp upstream
Tssr84852	transcription start site region 84852	680 bp upstream
Tssr84853	transcription start site region 84853	778 bp upstream
Tssr84854	transcription start site region 84854	808 bp upstream
Tssr84855	transcription start site region 84855	827 bp upstream
Tssr84856	transcription start site region 84856	843 bp upstream
Tssr84857	transcription start site region 84857	961 bp upstream
Tssr84858	transcription start site region 84858	980 bp upstream
Tssr89313	transcription start site region 89313	510 bp downstream
Tssr89314	transcription start site region 89314	570 bp downstream
Tssr89315	transcription start site region 89315	584 bp downstream
Tssr89316	transcription start site region 89316	612 bp downstream
Tssr89317	transcription start site region 89317	624 bp downstream
Tssr89318	transcription start site region 89318	646 bp downstream
Tssr89319	transcription start site region 89319	660 bp downstream
Tssr89320	transcription start site region 89320	669 bp downstream
Tssr89321	transcription start site region 89321	691 bp downstream
Tssr89322	transcription start site region 89322	737 bp downstream
Tssr89323	transcription start site region 89323	802 bp downstream
Tssr89324	transcription start site region 89324	852 bp downstream
Tssr89325	transcription start site region 89325	876 bp downstream
Tssr89326	transcription start site region 89326	916 bp downstream
Tssr89327	transcription start site region 89327	1037 bp downstream