rs8239760 SNP Detail

Summary

• ID
  rs8239760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46140729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                TAACCTA ACATGGGTCT CCCCTCCATN CCCAGGGAGC CAGGCTTGGC
  ACGTATGGCA GCAAGATGAA CCCCAGTCCC AATGGGACAA AGTGAAGGAT TTCGCTAATG
  TGTATGTGGA TGCGGTCAAA GACAGCGGCA GAGACTATGT GTCCCAGTTT GAATCCTCCT
  CCTTGGGCCA ACAGCTGAAG TAAGGAAAGA CCTAGCGTGG GGCCTGGAGC AGGTCAAGGG
  CTGCCCATCC AGGGTGGGCA GAGAGACCAG TGAGAAGATG CTGGAACTGA GCTGGCTAGC
  CCTTCACGGG CTTTCCTACC AGCTGGGCAC CATGGCAGGT TCCANTGGAG GACNAGGGAT
  R
  GGATTCATCT GGCTGTTGGG TAACCACAGC CCCTCATTCA GCCTATGAGT GCCAAATCCC
  TTTTCCTTGG TAACCCCCAG TACTGGTCAG ACAGCNCC                        
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ
ss12734336	L04149_DA284_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ
rs8239760					SNP	G	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46140729 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	515 bp proximal
Gm67994	predicted gene, 67994	1134 bp downstream
Rr195182	regulatory region 195182	529 bp distal
Rr195183	regulatory region 195183	72 bp proximal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1057 bp downstream
Tssr84840	transcription start site region 84840	717 bp downstream
Tssr84841	transcription start site region 84841	587 bp downstream
Tssr84842	transcription start site region 84842	485 bp downstream
Tssr84843	transcription start site region 84843	451 bp downstream
Tssr84844	transcription start site region 84844	277 bp downstream
Tssr84845	transcription start site region 84845	240 bp downstream
Tssr84846	transcription start site region 84846	185 bp downstream
Tssr84847	transcription start site region 84847	391 bp upstream
Tssr84848	transcription start site region 84848	478 bp upstream
Tssr84849	transcription start site region 84849	570 bp upstream
Tssr84850	transcription start site region 84850	610 bp upstream
Tssr84851	transcription start site region 84851	654 bp upstream
Tssr84852	transcription start site region 84852	673 bp upstream
Tssr84853	transcription start site region 84853	771 bp upstream
Tssr84854	transcription start site region 84854	801 bp upstream
Tssr84855	transcription start site region 84855	820 bp upstream
Tssr84856	transcription start site region 84856	836 bp upstream
Tssr84857	transcription start site region 84857	954 bp upstream
Tssr84858	transcription start site region 84858	973 bp upstream
Tssr89313	transcription start site region 89313	503 bp downstream
Tssr89314	transcription start site region 89314	563 bp downstream
Tssr89315	transcription start site region 89315	577 bp downstream
Tssr89316	transcription start site region 89316	605 bp downstream
Tssr89317	transcription start site region 89317	617 bp downstream
Tssr89318	transcription start site region 89318	639 bp downstream
Tssr89319	transcription start site region 89319	653 bp downstream
Tssr89320	transcription start site region 89320	662 bp downstream
Tssr89321	transcription start site region 89321	684 bp downstream
Tssr89322	transcription start site region 89322	730 bp downstream
Tssr89323	transcription start site region 89323	795 bp downstream
Tssr89324	transcription start site region 89324	845 bp downstream
Tssr89325	transcription start site region 89325	869 bp downstream
Tssr89326	transcription start site region 89326	909 bp downstream
Tssr89327	transcription start site region 89327	1030 bp downstream