rs8239768 SNP Detail

Summary

• ID
  rs8239768
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143415 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTCC ACCAAGAGCC AGAAGTCTCA
  K
  TGTCCACACC GGGAAACTTT CCTAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
ss12734344	L04149_DA290_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
rs8239768					SNP	T	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143415 () rs orientation: reverse

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1648 bp downstream
Apoc3	apolipoprotein C-III	933 bp downstream
Cpgi21701	CpG island 21701	1612 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1238 bp proximal
Rr206362	regulatory region 206362	1014 bp distal
Rr206363	regulatory region 206363	1385 bp proximal
Rr206364	regulatory region 206364	1985 bp proximal
Tssr84852	transcription start site region 84852	1921 bp downstream
Tssr84853	transcription start site region 84853	1887 bp downstream
Tssr84854	transcription start site region 84854	1874 bp downstream
Tssr84855	transcription start site region 84855	1854 bp downstream
Tssr84856	transcription start site region 84856	1843 bp downstream
Tssr84857	transcription start site region 84857	1721 bp downstream
Tssr84858	transcription start site region 84858	1684 bp downstream
Tssr84859	transcription start site region 84859	1015 bp upstream
Tssr84860	transcription start site region 84860	1154 bp upstream
Tssr84861	transcription start site region 84861	1200 bp upstream
Tssr89321	transcription start site region 89321	1990 bp upstream
Tssr89322	transcription start site region 89322	1907 bp upstream
Tssr89323	transcription start site region 89323	1855 bp upstream
Tssr89324	transcription start site region 89324	1827 bp upstream
Tssr89325	transcription start site region 89325	1802 bp upstream
Tssr89326	transcription start site region 89326	1768 bp upstream
Tssr89327	transcription start site region 89327	1654 bp upstream
Tssr89328	transcription start site region 89328	982 bp downstream
Tssr89329	transcription start site region 89329	1053 bp downstream
Tssr89330	transcription start site region 89330	1099 bp downstream
Tssr89331	transcription start site region 89331	1132 bp downstream
Tssr89332	transcription start site region 89332	1207 bp downstream