rs8239769 SNP Detail

Summary

• ID
  rs8239769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143359 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTGG TTTAATGTCT GCTGTGGCTC
  Y
  GCATGATTGT GGATTTAAAA ACTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12734345	L04149_DA290_2	ROCHEBIO	RPAMM	f	SNP				T		T		T	T	C					T
ss47697314	NES11320942	PERLEGEN	MM_PANEL2	r	SNP	G	A	A		A		A	A		G	A	A	G	G		A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8239769					SNP	C	T	T	T	T	T	T	T	T	C	T	T	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697314	NES11320942	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143359 () rs orientation: reverse

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1592 bp downstream
Apoc3	apolipoprotein C-III	989 bp downstream
Cpgi21701	CpG island 21701	1556 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1294 bp proximal
Rr206362	regulatory region 206362	958 bp distal
Rr206363	regulatory region 206363	1441 bp proximal
Tssr84850	transcription start site region 84850	1997 bp downstream
Tssr84851	transcription start site region 84851	1962 bp downstream
Tssr84852	transcription start site region 84852	1865 bp downstream
Tssr84853	transcription start site region 84853	1831 bp downstream
Tssr84854	transcription start site region 84854	1818 bp downstream
Tssr84855	transcription start site region 84855	1798 bp downstream
Tssr84856	transcription start site region 84856	1787 bp downstream
Tssr84857	transcription start site region 84857	1665 bp downstream
Tssr84858	transcription start site region 84858	1628 bp downstream
Tssr84859	transcription start site region 84859	1071 bp upstream
Tssr84860	transcription start site region 84860	1210 bp upstream
Tssr84861	transcription start site region 84861	1256 bp upstream
Tssr89318	transcription start site region 89318	1982 bp upstream
Tssr89319	transcription start site region 89319	1972 bp upstream
Tssr89320	transcription start site region 89320	1959 bp upstream
Tssr89321	transcription start site region 89321	1934 bp upstream
Tssr89322	transcription start site region 89322	1851 bp upstream
Tssr89323	transcription start site region 89323	1799 bp upstream
Tssr89324	transcription start site region 89324	1771 bp upstream
Tssr89325	transcription start site region 89325	1746 bp upstream
Tssr89326	transcription start site region 89326	1712 bp upstream
Tssr89327	transcription start site region 89327	1598 bp upstream
Tssr89328	transcription start site region 89328	1038 bp downstream
Tssr89329	transcription start site region 89329	1109 bp downstream
Tssr89330	transcription start site region 89330	1155 bp downstream
Tssr89331	transcription start site region 89331	1188 bp downstream
Tssr89332	transcription start site region 89332	1263 bp downstream