rs8239770 SNP Detail

Summary

• ID
  rs8239770
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46143295 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGGCT CATGAAGATA CACCGGGGAT
  R
  GATGGAGACC ACCTGCATAC CAACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12734346	L04149_DA290_3	ROCHEBIO	RPAMM	f	SNP				G		G		G	G	A					G
ss47697312	NES11320939	PERLEGEN	MM_PANEL2	r	SNP	C	C	C		C		C	C		T	C	C	C	C		C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8239770					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697312	NES11320939	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46143295 () rs orientation: reverse

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1528 bp downstream
Apoc3	apolipoprotein C-III	1053 bp downstream
Cpgi21701	CpG island 21701	1492 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1358 bp proximal
Rr206362	regulatory region 206362	894 bp distal
Rr206363	regulatory region 206363	1505 bp proximal
Tssr84849	transcription start site region 84849	1975 bp downstream
Tssr84850	transcription start site region 84850	1933 bp downstream
Tssr84851	transcription start site region 84851	1898 bp downstream
Tssr84852	transcription start site region 84852	1801 bp downstream
Tssr84853	transcription start site region 84853	1767 bp downstream
Tssr84854	transcription start site region 84854	1754 bp downstream
Tssr84855	transcription start site region 84855	1734 bp downstream
Tssr84856	transcription start site region 84856	1723 bp downstream
Tssr84857	transcription start site region 84857	1601 bp downstream
Tssr84858	transcription start site region 84858	1564 bp downstream
Tssr84859	transcription start site region 84859	1135 bp upstream
Tssr84860	transcription start site region 84860	1274 bp upstream
Tssr84861	transcription start site region 84861	1320 bp upstream
Tssr89314	transcription start site region 89314	1994 bp upstream
Tssr89315	transcription start site region 89315	1971 bp upstream
Tssr89316	transcription start site region 89316	1951 bp upstream
Tssr89317	transcription start site region 89317	1942 bp upstream
Tssr89318	transcription start site region 89318	1918 bp upstream
Tssr89319	transcription start site region 89319	1908 bp upstream
Tssr89320	transcription start site region 89320	1895 bp upstream
Tssr89321	transcription start site region 89321	1870 bp upstream
Tssr89322	transcription start site region 89322	1787 bp upstream
Tssr89323	transcription start site region 89323	1735 bp upstream
Tssr89324	transcription start site region 89324	1707 bp upstream
Tssr89325	transcription start site region 89325	1682 bp upstream
Tssr89326	transcription start site region 89326	1648 bp upstream
Tssr89327	transcription start site region 89327	1534 bp upstream
Tssr89328	transcription start site region 89328	1102 bp downstream
Tssr89329	transcription start site region 89329	1173 bp downstream
Tssr89330	transcription start site region 89330	1219 bp downstream
Tssr89331	transcription start site region 89331	1252 bp downstream
Tssr89332	transcription start site region 89332	1327 bp downstream