rs8239966 SNP Detail

Summary

• ID
  rs8239966
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115875049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAGGGAGG GGCAGGCGCA GCCGCGGGCC CGCGGGGAGC
  GCGCCGTTGC CCGGCAGCGA GAGCCAAGCT AGCAGCTCCA ACGGTCAAGG TCAAGCCTAG
  W
  CCCCTTCTGG CCCGGTTCCT GGCGTGCCAG CGTTTTAAGG CAGGCGGAAC AGACGAGCTC
  CGCGTGGGCG CCCTCCAAAG CACCAGGGCG GCCGGTTTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12734572	AF097997_BS773_1	ROCHEBIO	RPAMM	f	SNP	A	T	A	A	A	A	A	A	A	T		A	A		A
ss147277445	ENSMUSSNP6224961	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T
ss321276772	CHEV_4_115690457	CHEVERUD	SCREENING_POP	f	SNP											A			T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8239966					SNP	A	T	A	A	A	A	A	A	A	T	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115875049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	within coordinates
Faah	fatty acid amide hydrolase	within coordinates
Rr99792	regulatory region 99792	within coordinates
Tssr38489	transcription start site region 38489	569 bp downstream
Tssr42842	transcription start site region 42842	88 bp upstream
Tssr42843	transcription start site region 42843	2 bp downstream
Tssr42844	transcription start site region 42844	171 bp downstream
Tssr42845	transcription start site region 42845	190 bp downstream
Tssr42846	transcription start site region 42846	235 bp downstream
Tssr42847	transcription start site region 42847	268 bp downstream
Tssr42848	transcription start site region 42848	284 bp downstream
Tssr42849	transcription start site region 42849	301 bp downstream