rs8239967 SNP Detail

Summary

• ID
  rs8239967
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115875062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGCCGAC CGCCACCCGA
  GAGGACTCGG CACGCGCACA CCAACAGCTC CGCTGCAAAA CCCGGCCTGG ATCGCCCGCG
  ATTCCGCTTG AGGGAGGGGC AGGCGCAGCC GCGGGCCCGC GGGGAGCGCG CCGTTGCCCG
  GCAGCGAGAG CCAAGCTAGC AGCTCCAACG GTCAAGGTCA AGCCTAGACC CCTTCTGGCC
  S
  GGTTCCTGGC GTGCCAGCGT TTTAAGGCAG GCGGAACAGA CGAGCTCCGC GTGGGCGCCC
  TCCAAAGCAC CAGGGCGGCC GGTTTCCTTG ACCCGGCCTC TGGCTTCGTC TCCGCCCTAC
  AGCCGAAAAC TGGGCTAAGC CAGGGTCCTC AGAACAGGCT GGTCAGAACA GATCGGGTGC
  AGTGAACCTT ATCAACGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12734573	AF097997_BS773_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8239967					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115875062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	within coordinates
Faah	fatty acid amide hydrolase	within coordinates
Rr99792	regulatory region 99792	within coordinates
Tssr38489	transcription start site region 38489	582 bp downstream
Tssr42842	transcription start site region 42842	101 bp upstream
Tssr42843	transcription start site region 42843	2 bp upstream
Tssr42844	transcription start site region 42844	158 bp downstream
Tssr42845	transcription start site region 42845	177 bp downstream
Tssr42846	transcription start site region 42846	222 bp downstream
Tssr42847	transcription start site region 42847	255 bp downstream
Tssr42848	transcription start site region 42848	271 bp downstream
Tssr42849	transcription start site region 42849	288 bp downstream