rs8239971 SNP Detail

Summary

• ID
  rs8239971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115874581 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAAGG CTGCGACTTC AACTGCCCGG
  R
  CGCCAGAGGG CCGGCTGGCA GGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss12734577	AF097997_BS774_4	ROCHEBIO	RPAMM	f	SNP	G	A	A		A	A
ss45623456	mCV25138419	ABI	CRAMUS_MOUSE	r	SNP			T	C
ss147277434	ENSMUSSNP4152417	ENSEMBL	ENSEMBL_Sanger	r	SNP				C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs8239971					SNP	G	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115874581 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	within coordinates
Faah	fatty acid amide hydrolase	within coordinates
Rr99792	regulatory region 99792	within coordinates
Tssr38488	transcription start site region 38488	1572 bp downstream
Tssr38489	transcription start site region 38489	101 bp downstream
Tssr42842	transcription start site region 42842	272 bp downstream
Tssr42843	transcription start site region 42843	470 bp downstream
Tssr42844	transcription start site region 42844	639 bp downstream
Tssr42845	transcription start site region 42845	658 bp downstream
Tssr42846	transcription start site region 42846	703 bp downstream
Tssr42847	transcription start site region 42847	736 bp downstream
Tssr42848	transcription start site region 42848	752 bp downstream
Tssr42849	transcription start site region 42849	769 bp downstream