rs8239972 SNP Detail

Summary

• ID
  rs8239972
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115874540 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGCA GGCAGCGCAG ATGTGAGCCC
  M
  GGAACAGAAT CGCCCCCTCC TCGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	NZB/BlNJ	SPRET/EiJ
ss12734578	AF097997_BS774_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	NZB/BlNJ	SPRET/EiJ
rs8239972					SNP	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115874540 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	within coordinates
Faah	fatty acid amide hydrolase	within coordinates
Rr99792	regulatory region 99792	within coordinates
Tssr38488	transcription start site region 38488	1531 bp downstream
Tssr38489	transcription start site region 38489	60 bp downstream
Tssr42842	transcription start site region 42842	313 bp downstream
Tssr42843	transcription start site region 42843	511 bp downstream
Tssr42844	transcription start site region 42844	680 bp downstream
Tssr42845	transcription start site region 42845	699 bp downstream
Tssr42846	transcription start site region 42846	744 bp downstream
Tssr42847	transcription start site region 42847	777 bp downstream
Tssr42848	transcription start site region 42848	793 bp downstream
Tssr42849	transcription start site region 42849	810 bp downstream