rs8240080 SNP Detail

Summary

• ID
  rs8240080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40716027 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCATT GTGACCCCTC TCAGCCCTTT
  Y
  CTGAATGAAC ATCTACTTAT TGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cJ	C57BL/6J	CAST/EiJ
ss12734689	U73744_JC10_1	ROCHEBIO	RPAMM	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cJ	C57BL/6J	CAST/EiJ
rs8240080					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40716027 () rs orientation: reverse

Symbol	Name	Function Class
Hspa8	heat shock protein 8	within coordinates
Rr194757	regulatory region 194757	1374 bp proximal
Rr206240	regulatory region 206240	within coordinates
Rr206241	regulatory region 206241	373 bp proximal
Rr401324	regulatory region 401324	1470 bp upstream
Snord14c	small nucleolar RNA, C/D box 14C	1063 bp downstream
Snord14d	small nucleolar RNA, C/D box 14D	651 bp downstream
Snord14e	small nucleolar RNA, C/D box 14E	17 bp upstream
Tssr84485	transcription start site region 84485	496 bp downstream
Tssr84486	transcription start site region 84486	8 bp upstream
Tssr84487	transcription start site region 84487	1907 bp upstream