rs8240112 SNP Detail

Summary

• ID
  rs8240112
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4092901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACAAAGT TGCAGTTGTA
  TGTCAAAAAC CTTAGTTGGT GGTTCCTCGC CTTTCTGACA TGGACTCTAG TTCTTCAGCC
  CTTCAAAAAT AACAGCTGGA GAGATGGCCC CGATGTTCAA GGCATTTCCA GATCTTACAC
  AGGACCCAAG TTCAGTTCCC AGAACTCAGC CAGGTAGCTC ACAACTGGCT TGAACTCTGG
  R
  GCCAGATCTG ACACTTGGGG CTTACTTGGG GACTGCACTC ATTTGCACAA ACAGAGACAC
  ATAATTTTTA AAAATAAAAA AAATAATAAC AAAATAAACA CCTGTCCCTA AAGGCTACCA
  CACACAACCT CACTGTTACA CACACCCAAG TGTGTGAGCC CACAACTGAG AGGGAGGGAG
  AGAGAGAGAG AGAGAGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12734736	U15654_JC1570_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8240112					SNP	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4092901 () rs orientation: forward

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	680 bp upstream
Rr357953	regulatory region 357953	100 bp proximal
Rr363269	regulatory region 363269	300 bp distal
Tssr157438	transcription start site region 157438	659 bp upstream
Tssr157439	transcription start site region 157439	628 bp upstream