rs8240115 SNP Detail

Summary

• ID
  rs8240115
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4092340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGCTTC AGGGCGTGGA
  CTCACTGGCT GCTGTGCAGA GAGAAGTGGG GATCAAGTGC TGAATAGTCA GAGAGGTGTC
  TCAGGGATGG AAGCAAACAC AGGCCCCAGG ACAGCCAGCC TTATAAGGGG CATTGCGCTC
  CGCCCCGGAT GCCGCCCCGG ATGCTGACTC AACACGTTGG AGAGAATAGC CGGTATTGGA
  K
  CTCTGCAGCT CCCGCCTCCT GCCCGAGACA CTAGCATGTG ACCCGAGTCG GCCACAGTGC
  TGGGTTCATT TTTGAGTCCT GCTCCGAGAA GGGTGTGTCC AGCTCCCTTC CACTTTGTGC
  TGGAGCTGGA CAGCTTTCTG CAGCATGTGC AACTCTGTCA GCCTTCTGCC TATCCCCATC
  TACCAACCTC TCTAGTAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MRL/MpJ	SPRET/EiJ
ss12734739	U15654_JC1572_2	ROCHEBIO	RPAMM	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	MRL/MpJ	SPRET/EiJ
rs8240115					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4092340 () rs orientation: forward

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	119 bp upstream
Rr357953	regulatory region 357953	661 bp proximal
Rr363269	regulatory region 363269	within coordinates
Tssr157438	transcription start site region 157438	98 bp upstream
Tssr157439	transcription start site region 157439	67 bp upstream