rs8240116 SNP Detail

Summary

• ID
  rs8240116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4092375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

        GAAT AGTCANAGAG GTGTCTCAGG GATGGAAGCA AACACAGGCC CCAGGACAGC
  CAGCCTTATA AGGGGCATTG CGCTCCGCCC CGGATGCCGC CCCGGATGCT GACTCAACAC
  NTTGGAGAGA ATAGCCGGTA TTGGANCTCT GCAGCTCCCG CCTCCTGCCC GAGACACTAG
  Y
  ATGTGACCCG AGTCGGCCAC AGNNNNTGCT GGGTTCATTT TTGAGTCCTG CTCCGAGAAG
  GGTGTGTCCA GCTCCCTTCC ACTTTTAA                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12734740	U15654_JC1572_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8240116					SNP	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4092375 () rs orientation: forward

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	154 bp upstream
Rr357953	regulatory region 357953	626 bp proximal
Rr363269	regulatory region 363269	within coordinates
Tssr157438	transcription start site region 157438	133 bp upstream
Tssr157439	transcription start site region 157439	102 bp upstream