rs8240155 SNP Detail

Summary

• ID
  rs8240155
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45818794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                       T GAGTGGGGAG
  ACGGGGCTTG AAGGACGGTG GTTTAAGAGC AGAATCTTGA GCAGGAAAGG TGCCCGTCTA
  CCTTAGTTGA GGGTGATGGG AGTCTATTTT CAGAAAGTGC TTAAGATTTC TTGCTCAGAG
  GTCTGAGAAT AAGTGCTGCT GTGCCTCTGG ACCACAGGGA Gaaaaaaaca aacaaacaaa
  M
  aaaacaaaac aaaaacaaaa CTCGGNTTCT CTTCCAGAAA TCTCTGTTGG AACCTACAGA
  GATTGTAGGA GCCTGCCTGA GTGGATGGCT GCTATCAAAC CAGACTTTGG ATTTACTTAT
  ATGCAGACTA GGGAAGACAC CTGGGTATCT TGGGCCAAAT TGAAGCAGCC CCAGGGGCAG
  GAAGAATGTA ATAGGAAATA TGCCATGGAA CTTAAGGACA TGGTGGCCCA CACCTATAAT
  AACAGCAGTA AAGGGGTGGA AGCAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	C57BL/6J	CAST/EiJ
ss12734792	U75902_JC16_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	C57BL/6J	CAST/EiJ
rs8240155					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45818794 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21697	CpG island 21697	122 bp distal
Pcsk7	proprotein convertase subtilisin/kexin type 7	within coordinates
Rnf214	ring finger protein 214	585 bp upstream
Rr677992	regulatory region 677992	1100 bp distal
Rr677993	regulatory region 677993	989 bp distal
Rr677994	regulatory region 677994	1034 bp distal
Rr677995	regulatory region 677995	638 bp distal
Rr677996	regulatory region 677996	966 bp distal
Rr677997	regulatory region 677997	501 bp distal
Rr677998	regulatory region 677998	68 bp distal
Rr677999	regulatory region 677999	162 bp proximal
Tssr84815	transcription start site region 84815	944 bp downstream
Tssr84816	transcription start site region 84816	483 bp downstream
Tssr89273	transcription start site region 89273	1059 bp upstream
Tssr89274	transcription start site region 89274	602 bp upstream
Tssr89275	transcription start site region 89275	575 bp upstream
Tssr89276	transcription start site region 89276	89 bp downstream