rs8240181 SNP Detail

Summary

• ID
  rs8240181
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:23939518 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AAACAGAAGG TTATGTGCAA
  TTGTTCAGGA GAACAAGTAC GCTTCTGGCT TCTGCTCCTG TCTTTATCAG CTAACAACCA
  TGGAGAGATC CAATGGGGAC TTTAGGTGAG TGGTAAATAA CTGTGAATGG GTGAAGGGAA
  CTTTCAGTTT TAGGAGGCTC AGAAATGAGA CGTGCCTGTG TTAATCCCTT TATGAGACTA
  S
  GAAGATCTCA TGTTACTTTA AATGTCTCTT ACAGCTCCTG GGCTCCTCCT TAATTTTTTT
  TTTTTTTCTG ATTTGTTCAA ACAAATCGAT CAACATTTGA AGAATTCAGC AGTTGAGCTT
  AAGAGTCAAA AACTAAGATA CTAAGGCAGC GAACTCTCTG CAACAAACAC ACGTAGCCAG
  CTGCTGGTAG GTTAATAGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12734820	AF297038_JC1609_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8240181					SNP	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:23939518 () rs orientation: reverse

Symbol	Name	Function Class
Hnmt	histamine N-methyltransferase	112 bp upstream
Tssr22898	transcription start site region 22898	660 bp upstream
Tssr22899	transcription start site region 22899	638 bp upstream
Tssr22900	transcription start site region 22900	126 bp upstream
Tssr22901	transcription start site region 22901	106 bp upstream
Tssr22902	transcription start site region 22902	87 bp upstream