rs8240182 SNP Detail

Summary

• ID
  rs8240182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:23938948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGTTCCG TGGAATTATT
  TAGAAACCTC CGAAAAGATT CTACGTATCT GCCTTGGTCA GAAAATAAGC TCCTCATGCA
  AGATGCCATA TTGGGTTCTC TGATAAAAAC AAGGAGGGAG CTACGTTTAA CTTCCTCTGC
  TCCGAGTTCC TTCTTTTCCC TCTTTCTCTC CCCTCCCCCA CCAGTTTCCT TAACCCCGCC
  R
  TCTCCCAAAC CGCTCCAAAT AAGCAAACAA TTAATACATG AATAAGAGAT AAACGACAGC
  ACTTAAATCT GCTTTGTATT TGACCAGCGC TGAAAACTTC CAAACAGAGC CTCCTGCTCC
  CACCACTGTT TGTACAGAAC TTTCCGTACT TTACACCTTG CAGAGCTATA AAAGCATTCC
  AATCGCTTCC CAGTTATTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12734821	AF297038_JC1610_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8240182					SNP	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:23938948 () rs orientation: forward

Symbol	Name	Function Class
Hnmt	histamine N-methyltransferase	within coordinates
Rr552840	regulatory region 552840	837 bp distal
Rr552841	regulatory region 552841	within coordinates
Tssr22898	transcription start site region 22898	90 bp upstream
Tssr22899	transcription start site region 22899	68 bp upstream
Tssr22900	transcription start site region 22900	420 bp downstream
Tssr22901	transcription start site region 22901	453 bp downstream
Tssr22902	transcription start site region 22902	472 bp downstream