rs8240273 SNP Detail

Summary

• ID
  rs8240273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171041712 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCCCT TAGGCAGCAG GCCACAAGAT
  Y
  GGGTGTAGGA TGCCTCTCCC CAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
ss12734923	AF009326_JC1870_1	ROCHEBIO	RPAMM	f	SNP	C	T	C		T		C	C	C
ss119996301	PARCsnp_1.12228	PARC_SEQ	INBRED	r	SNP				G	A
ss119997957	PARCsnp_1.01247	PARC_SEQ	INBRED	r	SNP				G	A
ss320117237	CHEV_1_173144274	CHEVERUD	SCREENING_POP	r	SNP						G				A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J
rs8240273					SNP	C	T	C	C	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171041712 () rs orientation: reverse

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423242	regulatory region 423242	971 bp distal
Rr423243	regulatory region 423243	112 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	1867 bp downstream
Tssr9983	transcription start site region 9983	136 bp downstream
Tssr9984	transcription start site region 9984	98 bp downstream