rs8240276 SNP Detail

Summary

• ID
  rs8240276
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171041942 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

     GTTTTTG CTAGACACTG GGCAGTTCAG CTTAGCTGCA AGAGGATTAT AACTTGGAGG
  TGTACCAGTG TTTAANGGTG GACTGATAGA ANTGTCGGGG TTGTTTCTGT TGGGGAGGAA
  GCATTCACCT GAAGAAGCCC TTGCAGCCCT CACAAGTCAG GGCGTGGAAA TGATAGCCTG
  TGGCCCGGTC TCCACACACC ACACAGTTCC TCGGCCCATA TTCTTCTTCA CTGGCCATGG
  K
  TTCTAGTGTT AGCATAGCTG TCATGGTCTC CTGAATGTGG GAGGAGTTGA GAATCAGCAC
  TGNGCCATAG GACTCTCTTC TCTCTCCTCT ACAGAATCTC TTCCCAAGAC TGCCCAGCCT
  GANACCGGGC TCCCCAGCAC TGAGGACATT AAAAAGAACT CTCTGGGCTG CAAACCCCAG
  GCATTCACTG TCCCCACCTC CCCAGCACTG AGGACA                          
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12734926	AF009326_JC1871_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8240276					SNP	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171041942 () rs orientation: reverse

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423242	regulatory region 423242	1201 bp distal
Rr423243	regulatory region 423243	342 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	1637 bp downstream
Tssr9983	transcription start site region 9983	366 bp downstream
Tssr9984	transcription start site region 9984	328 bp downstream