rs8240280 SNP Detail

Summary

• ID
  rs8240280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171042441 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATGCA GGTGGGTCTA AGAGCACCCC
  R
  AAAGGACACG GCCTAAAAGA CGGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12734930	AF009326_JC1872_2	ROCHEBIO	RPAMM	f	SNP	G			G		A		G		G			G					G		G	G				G
ss49750716	NES13033277	PERLEGEN	MM_PANEL2	r	SNP		C		C	T		C		T	C		T	C	C	C		T		C			C	C			C
ss119996313	PARCsnp_1.12234	PARC_SEQ	INBRED	r	SNP											T		C
ss119997978	PARCsnp_1.01257	PARC_SEQ	INBRED	r	SNP											T		C
ss146157077	ENSMUSSNP2710349	ENSEMBL	ENSEMBL_Sanger	r	SNP			C	C									C
ss320117249	CHEV_1_173145003	CHEVERUD	SCREENING_POP	r	SNP																C								C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8240280					SNP	G	G	G	G	A	A	G	G	A	G	A	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750716	NES13033277	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171042441 () rs orientation: reverse

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423242	regulatory region 423242	1700 bp distal
Rr423243	regulatory region 423243	841 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	1138 bp downstream
Tssr9983	transcription start site region 9983	865 bp downstream
Tssr9984	transcription start site region 9984	827 bp downstream