rs8240281 SNP Detail

Summary

• ID
  rs8240281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171042433 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGGTC TAAGAGCACC CCAAAAGGAC
  R
  CGGCCTAAAA GACGGATCGA TTTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12734931	AF009326_JC1872_3	ROCHEBIO	RPAMM	f	SNP	G		A	A	G	G	A	G		G	G		G
ss45037308	mCV24419644	ABI	CRAMUS_MOUSE	r	SNP		C	T					C
ss119996311	PARCsnp_1.12233	PARC_SEQ	INBRED	r	SNP							T	C
ss119997976	PARCsnp_1.01256	PARC_SEQ	INBRED	r	SNP							T	C
ss146157075	ENSMUSSNP6996712	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	T					C
ss320117248	CHEV_1_173144995	CHEVERUD	SCREENING_POP	r	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8240281					SNP	G	G	A	A	G	G	A	G	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171042433 () rs orientation: reverse

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423242	regulatory region 423242	1692 bp distal
Rr423243	regulatory region 423243	833 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	1146 bp downstream
Tssr9983	transcription start site region 9983	857 bp downstream
Tssr9984	transcription start site region 9984	819 bp downstream