rs8240285 SNP Detail

Summary

• ID
  rs8240285
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171042302 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACCCT CGTGTGGCAA TGATCTCGGT
  R
  CTTTGCAGGT AGTGTGTGCT ACACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12734935	AF009326_JC1872_7	ROCHEBIO	RPAMM	f	SNP	G		G	A	G	G	A	G		G	G	G		A
ss119996307	PARCsnp_1.12231	PARC_SEQ	INBRED	r	SNP							T	C
ss119997972	PARCsnp_1.01254	PARC_SEQ	INBRED	r	SNP							T	C
ss146157063	ENSMUSSNP431768	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C					C
ss320117245	CHEV_1_173144864	CHEVERUD	SCREENING_POP	r	SNP									C				C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8240285					SNP	G	G	G	A	G	G	A	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171042302 () rs orientation: reverse

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423242	regulatory region 423242	1561 bp distal
Rr423243	regulatory region 423243	702 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	1277 bp downstream
Tssr9983	transcription start site region 9983	726 bp downstream
Tssr9984	transcription start site region 9984	688 bp downstream