rs8240288 SNP Detail

Summary

• ID
  rs8240288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171043388 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATGGG AGGGAAAGCA GGAGTTTGAG
  R
  GGCAGACAGG CTTGATTCCG AAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12734938	AF009326_JC1875_1	ROCHEBIO	RPAMM	f	SNP	A		A	A	A	G	A		A	A		G
ss119997986	PARCsnp_1.01261	PARC_SEQ	INBRED	r	SNP						C	T
ss146157093	ENSMUSSNP7175906	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	T
ss320117253	CHEV_1_173145950	CHEVERUD	SCREENING_POP	r	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8240288					SNP	A	A	A	A	A	G	A	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171043388 () rs orientation: reverse

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423243	regulatory region 423243	1788 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	191 bp downstream
Tssr9983	transcription start site region 9983	1812 bp downstream
Tssr9984	transcription start site region 9984	1774 bp downstream