rs8240289 SNP Detail

Summary

• ID
  rs8240289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171043370 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTTTG AGGGGCAGAC AGGCTTGATT
  Y
  CGAAGTGTGA TTCTGTTTCC TAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12734939	AF009326_JC1875_2	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	C	T		T	T		T
ss119996319	PARCsnp_1.12237	PARC_SEQ	INBRED	r	SNP						G	A
ss119997984	PARCsnp_1.01260	PARC_SEQ	INBRED	r	SNP						G	A
ss146157089	ENSMUSSNP3442485	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	A
ss320117252	CHEV_1_173145932	CHEVERUD	SCREENING_POP	r	SNP								A			G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8240289					SNP	T	T	T	T	T	C	T	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171043370 () rs orientation: reverse

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423243	regulatory region 423243	1770 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	209 bp downstream
Tssr9983	transcription start site region 9983	1794 bp downstream
Tssr9984	transcription start site region 9984	1756 bp downstream