rs8240295 SNP Detail

Summary

• ID
  rs8240295
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171043857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACATTCT ATACCCTTCC
  CACTTTATTC TCCACCCTCC CCTTCTTTCC CATGGTGCAT TGCTTTCTGC TGAAGTGTAT
  CACAGATGAA TATGAGATCG ACAGAAAGTG TGCAGGGATT CCCCTGCCAT CAGGAAACAT
  TAATTCAATG AAGTCCCAAG GAAGCCTCAG AAACTCTTTC TTCCTTCCTC CTTCCTTATC
  W
  GGGGAGGTGG AGTGGCCCCA ACTGAAGGGA TGGCTGAAAG GTGCTCGCTG CTGGTCTCAA
  CAGCTTTGTC ATCTCTCTTG CCTGACACAG TGATACTGTC AGCAGAAGCC CTGGCATTGC
  GGCGAGCCAG ACAGGCACAG CGGCGGGCAG AGAAAGCATC TTTGCAACTG AATCAGCAGC
  AGAAAGAACT GGTCCAGATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12734949	AF009326_JC1877_6	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8240295					SNP	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171043857 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Tomm40l	translocase of outer mitochondrial membrane 40-like	within coordinates