rs8240301 SNP Detail

Summary

• ID
  rs8240301
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171045950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTT CTTTTACACT TGACCTCAAA
  K
  CCCTGGGTTC AGGAAAAACT AGGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12734964	AF009326_JC1882_2	ROCHEBIO	RPAMM	f	SNP	T		G			T			G		T						T	T
ss45102247	mCV24419620	ABI	CRAMUS_MOUSE	f	SNP			G								T
ss49750708	NES13033183	PERLEGEN	MM_PANEL2	f	SNP		T	G	G	T		G	T		G	T	T	T		G	T			T	G		T
ss119996339	PARCsnp_1.12247	PARC_SEQ	INBRED	f	SNP									G		T
ss119998009	PARCsnp_1.01273	PARC_SEQ	INBRED	f	SNP									G		T
ss320117271	CHEV_1_173148512	CHEVERUD	SCREENING_POP	f	SNP														T							G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8240301					SNP	T	T	G	G	T	T	G	T	G	G	T	T	T	T	G	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750708	NES13033183	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171045950 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Tomm40l	translocase of outer mitochondrial membrane 40-like	within coordinates
Tssr286	transcription start site region 286	751 bp upstream