rs8240357 SNP Detail

Summary

• ID
  rs8240357
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110848226 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AAGAAATATC AAGGAAGGGA
  TGAGCAGCCT CATGTCTGTG GTCTTGGGAG ACCTAGAGGA CAAGCCTGGC TTCTGCCCTC
  TCCCCGGGGC CCTTTATCTG TGCTGGGTGA CCTCACCGGG CTGGCCCCAC CCTATTGCCC
  AATAGGCCTG CCTTCCAGCC CCATTGCCCT CAACCAGGTG TGCTAGTTCT TAGAGGCCAG
  S
  TTCCTGGAGC CCAGAAGGAG GAAACAGGGA CTCCAGTACC CCCTACACAG GCGCTGGTAC
  AGGAAACCGA GTGATTTCCT TAATCTCCAC CCAGCTTCTG CAGGATCAGA GTCACAGTCC
  CCAAGTCTTC TCCTTTCTCT GTTTCCAGTA CTTTCTAGAG GTGGGACATG GGGTAGGGGG
  TCTATATTTG TGGGTTACCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12735033	M64423_JC1913_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C		C	C	C		G
ss323195418	CHEV_9_110921662	CHEVERUD	SCREENING_POP	r	SNP								G				C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8240357					SNP	C	C	C	C	C	C	C	C	C	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110848226 () rs orientation: reverse

Symbol	Name	Function Class
Ltf	lactotransferrin	134 bp upstream
Rr687278	regulatory region 687278	within coordinates
Tssr87456	transcription start site region 87456	126 bp upstream
Tssr87457	transcription start site region 87457	1785 bp upstream
Tssr91676	transcription start site region 91676	1991 bp upstream