rs8241039 SNP Detail

Summary

• ID
  rs8241039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30429302 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAGCC GAGAGAAGTA ACACAAAAGG
  Y
  CCCTCCTTGC TCCCCTGCGC ACCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12735759	U09964_JC4255_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C		C	C	C	C	T
ss12747160	Atp4a_Gapds_JC4136_2	ROCHEBIO	RPAMM	f	SNP										C	C		C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8241039					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30429302 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	within coordinates
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	within coordinates
Rr400253	regulatory region 400253	18 bp downstream
Rr644901	regulatory region 644901	961 bp distal
Rr644902	regulatory region 644902	888 bp distal
Rr644903	regulatory region 644903	238 bp distal
Tmem147	transmembrane protein 147	343 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	234 bp downstream
Tssr65803	transcription start site region 65803	118 bp downstream
Tssr65804	transcription start site region 65804	71 bp downstream
Tssr65805	transcription start site region 65805	1297 bp upstream
Tssr71842	transcription start site region 71842	1040 bp upstream
Tssr71843	transcription start site region 71843	424 bp upstream
Tssr71844	transcription start site region 71844	376 bp upstream
Tssr71845	transcription start site region 71845	321 bp upstream