rs8241275 SNP Detail

Summary

• ID
  rs8241275
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24235329 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GAATGAAACA GAAGGATGAG
  AAGGAGAGAG ATTAGGTGAC TGTAGGGTCC CCAGCAGATT TCCATCCCGA GGCCACAGCA
  AGGCAATAGA GACTAGCGAC TGCCATTTCA GGCTCAAGGT GGTTGCTTAT AAAGAAAGTA
  GTCATTCACC AGCCTGTGCT GCTGTCATTC CGTTCCACTG TCAGAAGCGG AAAAACCCTC
  W
  TATTTCCAAA AAGAGAAACC TTTACTGCTG TCGCTGTCAA CCCTGAAAGT GTCGCAATGG
  TGTGTTGTAA CTGATCTCCT CCCCCTTACC CTGTGTAATT TCCCCAAAAT TAAGTTCTCT
  GTTTCCCCTT CATGGTGTTC CTGGGAAGAA GAGCACAATG AAAACCAGAC TCCCTCATTT
  GCATGACAGG TACTCCGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12736020	L32838_JC4362_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8241275					SNP	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24235329 () rs orientation: reverse

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr56387	regulatory region 56387	71 bp proximal
Tssr16578	transcription start site region 16578	45 bp downstream
Tssr16579	transcription start site region 16579	22 bp downstream
Tssr16580	transcription start site region 16580	within coordinates
Tssr16581	transcription start site region 16581	90 bp upstream