rs8241278 SNP Detail

Summary

• ID
  rs8241278
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24236297 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCCTTGGGAT AGATGTATAG
  AATCACAGTT AGAGTCCCAG CCTCCAGCTG TGGATCCAAA GCAGACAGGG TCAAAGGGGA
  AGTGACTCAA CACAGACTTC ACTCTCAGGA AGGATCAAGA ACAGATCATA TGCACCAACA
  ATCTCTTTAT TCATTTTAAA ATCAAAATCG AGGCCTGCCA TTTTTACTAT AAGGTTGATG
  S
  CATCTCCCAA GGCTTTTGAT CCAATTTTTA AAACTCAGGT TATTTTTCAG GCACTTTACA
  GTTCTCAGAG CATAGGTCTC AGAACATGGT TACAGTATCA CTCATGTATT TAGTGTTCAC
  CCTGTAAGGC ACACAAGGGG TTATCATCAG AGCAGTATCA TGTTACAGAT AAGGAAACTG
  GGGACTCCAA CGAGAGATAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12736023	L32838_JC4363_1	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G		G	G	C	G				G		G	G		G
ss37426412	NES08783637	PERLEGEN	MM_PANEL2	r	SNP		C		C	C		C		C	C		G	C	C	C	C		C			C		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8241278					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426412	NES08783637	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24236297 () rs orientation: reverse

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr41952	regulatory region 41952	1304 bp proximal
Rr56387	regulatory region 56387	697 bp distal
Tssr16578	transcription start site region 16578	1013 bp downstream
Tssr16579	transcription start site region 16579	990 bp downstream
Tssr16580	transcription start site region 16580	938 bp downstream
Tssr16581	transcription start site region 16581	863 bp downstream
Tssr16582	transcription start site region 16582	1169 bp upstream
Tssr16583	transcription start site region 16583	1418 bp upstream