rs8241280 SNP Detail

Summary

• ID
  rs8241280
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24236106 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGAT AAGGAAACTG GGGACTCCAA
  M
  GAGAGATATC TTCCAAGTCA ACACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12736025	L32838_JC4363_3	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C		C	C	C	C				C		C	C		A
ss37426414	NES08783635	PERLEGEN	MM_PANEL2	r	SNP		G		G	G		G		G	G		G	G	G	G	G		G			T		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8241280					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426414	NES08783635	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24236106 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il1rn	interleukin 1 receptor antagonist			Intron
				Noncoding-Transcript-Variant
Rr552851	regulatory region 552851			1079 bp distal
Rr552852	regulatory region 552852			774 bp distal
Rr552853	regulatory region 552853			1570 bp proximal
Tssr16578	transcription start site region 16578			822 bp downstream
Tssr16579	transcription start site region 16579			799 bp downstream
Tssr16580	transcription start site region 16580			747 bp downstream
Tssr16581	transcription start site region 16581			672 bp downstream
Tssr16582	transcription start site region 16582			1360 bp upstream
Tssr16583	transcription start site region 16583			1609 bp upstream