rs8242897 SNP Detail

Summary

• ID
  rs8242897
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:153779606 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATTCC CCACAGGTCC AACTGTTGTA
  S
  TTCAAGTTAT GCTTGTATAT AAACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss12737687	Glns_JC4970_1	ROCHEBIO	RPAMM	f	SNP		C	C	C	C	C	C	G	G	C	G
ss45125257	mCV24628128	ABI	CRAMUS_MOUSE	r	SNP	G	G					G		C
ss145751860	ENSMUSSNP3441609	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G							C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs8242897					SNP	C	C	C	C	C	C	C	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153779606 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A930039A15Rik	RIKEN cDNA A930039A15 gene			1258 bp upstream
Glul	glutamate-ammonia ligase			Intron
				Noncoding-Transcript-Variant
Tssr9503	transcription start site region 9503			756 bp upstream