rs8242907 SNP Detail

Summary

• ID
  rs8242907
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153780546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACCTCCA TCCTGTTGCC
  ATGTTTCGAG ACCCCTTCCG CAAAGACCCC AACAAGCTGG TGCTATGTGA AGTTTTCAAG
  TATAACCGGA AACCTGCAGG CAAGTATGGG ATGGGTGTGG CTGGCTGTAA ATCCTGAAAC
  TCTAGGGAGG TGACATTCTC AATGAATTGA GAAGCCGCTC TCTAAGAACG TAGGGATGGC
  R
  GGGTGGCTAT TCTACCCTGA ACTTTCCTGT TGGGAACAGT GTGCTCAATC CTTTCTTCCA
  TGGTTCCTTT TATTGTTTGT ATAGTGTTGG CTCTTCTGTC TGTTTGCTGA CGGGCAACCT
  CTACCTGCTG ATCTAAAAGC CTGTGTTTAA AAGTTCTGTA GTTTTTGAAT TTAAATACTA
  GATCTACCAC TGTTCTACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss12737697	Glns_JC4971_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs8242907					SNP	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153780546 () rs orientation: forward

Symbol	Name	Function Class
A930039A15Rik	RIKEN cDNA A930039A15 gene	318 bp upstream
Glul	glutamate-ammonia ligase	within coordinates
Tssr9503	transcription start site region 9503	171 bp downstream