rs8242920 SNP Detail

Summary

• ID
  rs8242920
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153780817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGTTTGT ATAGTGTTGG
  CTCTTCTGTC TGTTTGCTGA CGGGCAACCT CTACCTGCTG ATCTAAAAGC CTGTGTTTAA
  AAGTTCTGTA GTTTTTGAAT TTAAATACTA GATCTACCAC TGTTCTACCT GCTTTTTTTT
  CTTCTGAATT GTGTGTGCTG TATGTGGAGA GCATGCGTCG GAGAGCATGC CTTGCTGGGT
  K
  CGTGGACGTC AACGGGCAGC GTTGGAGTTG GTTGTCTCCT GCCTGTTTAT GTGAGCTCTG
  GAGGTGGAAC TCAGGTTGCC AGGCTCGAGT GGCAACACCT TTACCCACTG AGCCGTCTCA
  GTAGTCTTCT CTGATAAGAG CCCATCCCGA AGTCATTGGA AGATCACATG AATGACCGTG
  TGCCACAATC ACTTGGGAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12737710	Glns_JC4972_9	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8242920					SNP	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153780817 () rs orientation: forward

Symbol	Name	Function Class
A930039A15Rik	RIKEN cDNA A930039A15 gene	47 bp upstream
Glul	glutamate-ammonia ligase	within coordinates
Tssr9503	transcription start site region 9503	442 bp downstream