rs8242962 SNP Detail

Summary

• ID
  rs8242962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153780035 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCAC TCTTTGATTT CTGCTGGCAC
  Y
  GAGCACATGG AGCGCGCGTG CGCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12737752	Glns_JC4978_8	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8242962					SNP	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153780035 () rs orientation: reverse

Symbol	Name	Function Class
A930039A15Rik	RIKEN cDNA A930039A15 gene	829 bp upstream
Glul	glutamate-ammonia ligase	within coordinates
Tssr9503	transcription start site region 9503	327 bp upstream