rs8242963 SNP Detail

Summary

• ID
  rs8242963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:153780021 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTGC TGTTGGAGCC CTCAGACTGA
  AAGGTACTAG AGCCATCAAA GTTCCACTCA GGTANCTCTG GGCAAGACAA AGATAGAAAA
  TTAAATTAAC TTTAAacgtg ttatttgagc ctgcaggaag aagccagacg aggagggttg
  gatctcccgg aattgagagt tacagatggt tgtgagccac tatgtgggtg ttgttanctg
  aacccagatc ggtgagagca acaagagctc tcaatcacat gaaagcccac aactgtctgt
  aacttcagnt cctgcggtcc tcacnntctt nganttctgc tggcacngag cacatggagc
  R
  cgcgnncgcg cgcgcacata cacnnncann nanataCAGT TTTAAAAGTT TTNANTGCAC
  ACGCTAA                                                          
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12737753	Glns_JC4978_9	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8242963					SNP	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153780021 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A930039A15Rik	RIKEN cDNA A930039A15 gene			843 bp upstream
Glul	glutamate-ammonia ligase			Intron
				Noncoding-Transcript-Variant
Tssr9503	transcription start site region 9503			341 bp upstream