rs8242985 SNP Detail

Summary

• ID
  rs8242985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:153781795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                              CCAAA
  ATGAAGGNTG TTAATACCTT AGACNNAGAT GGTTATTTTT TTTCTAGCTT GGGAATTGTT
  TTCAGNTATA CTCATATATA ATTATATGTC TGTATGTCTG TCTACCTATC TACTTTTGTA
  CCAGTCANAA CTGTAAAACT TAGCACTTAA ACTCACCTGG CATGTGAACC TAATGGACAA
  ATTATTCTCA ATAACAGATC TGGCCTTCAG TGTCTGAGAC ACNNNNNNNN NNATCTGACA
  R
  CTAGAAGCAG TTGTCCTGTG AATCTGAGAA TNAGTGCCTG GCGTGTGGTG TTGGGATGGT
  GGCCAGCATG CAGATAGGGT GACCACTTGC TCNGATTCCA TTCCCATGAT GCTGCGTGGC
  TGACTTTAAT TATAAA                                                
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12737775	Glns_JC4979_13	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8242985					SNP	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153781795 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A930039A15Rik	RIKEN cDNA A930039A15 gene			342 bp downstream
Glul	glutamate-ammonia ligase			Intron
				Noncoding-Transcript-Variant
Tssr9503	transcription start site region 9503			1420 bp downstream
Tssr9504	transcription start site region 9504			1881 bp upstream