rs8242987 SNP Detail

Summary

• ID
  rs8242987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153781888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAACTTAG CACTTAAACT
  CACCTGGCAT GTGAACCTAA TGGACAAATT ATTCTCAATA ACAGATCTGG CCTTCAGTGT
  CTGAGACACT AGGGAATACA TCTGACAACT AGAAGCAGTT GTCCTGTGAA TCTGAGAATG
  AGTGCCTGGC GTGTGGTGTT GGGATGGTGG CCAGCATGCA GATAGGGTGA CCACTTGCTC
  R
  GATTCCATTC CCATGATGCT GCGTGGCTGA CTTTAATTAT AAAAAAGTCT ATTAGCCATT
  TCCTGCAAAT GGACAATTAT CACTTCTTCC ATTTTCCTTG GTGATAAAAC ATGGTGGTTA
  GGCCTGGGTC AGTCTCTCCT GTGACCAGCA CTGGAGCTGT GTGAGAGGGC TCTAGTCCTG
  ATGGCATGTT GATTCTTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12737777	Glns_JC4979_15	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8242987					SNP	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153781888 () rs orientation: forward

Symbol	Name	Function Class
A930039A15Rik	RIKEN cDNA A930039A15 gene	435 bp downstream
Glul	glutamate-ammonia ligase	within coordinates
Tssr9503	transcription start site region 9503	1513 bp downstream
Tssr9504	transcription start site region 9504	1788 bp upstream