rs8242988 SNP Detail

Summary

• ID
  rs8242988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52169725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAACA CCAAAAAAAA
  CCCCCAAAAG GTTGAGACAT AACTCTCATG CCATAAAATA CACCATTTTA AAGTGTCTAA
  ATCCGTGGCT TTTAGTAGCT GTATGTAAGG TAGCGCAATA GTCACCATGA TCTCACTTAA
  AAACATATTC TTCTCCCCAG GAGAAACCCC ACAGCCTCTA GCAATCACCC CTCTGCTCCA
  Y
  TCTCAGCTAC CTGCAACCCC TAAGCTGCCC TGTCTATCTG GTCTGGATAT TACCATTTGA
  ATCACATTCA TCTGGAGTTT AAGGGCTCTT AAGCCTTTCA GATCATAGGC TCCAACAAGA
  GCCCACAGAA GAGGCCAAAG ACTCATGTTG TCTCTGTCCT GTTTGGGATC ACACTGTCAT
  GCAAAGCCTC TTGCCTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12737778	TCF7_1_JC4980_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8242988					SNP	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52169725 () rs orientation: forward

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Rr386072	regulatory region 386072	866 bp downstream
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	1103 bp upstream
Tssr107873	transcription start site region 107873	1734 bp upstream
Tssr107874	transcription start site region 107874	1527 bp upstream
Tssr107875	transcription start site region 107875	173 bp downstream
Tssr107876	transcription start site region 107876	1309 bp downstream
Tssr107877	transcription start site region 107877	1341 bp downstream