rs8242996 SNP Detail

Summary

• ID
  rs8242996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52169981 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACGGA AGGAGGGGGC CTAGCTGATG
  Y
  GCTAGGCTGG GTGCTGGGGG CAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12737786	TCF7_1_JC4981_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8242996					SNP	C	C	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52169981 () rs orientation: reverse

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Rr386072	regulatory region 386072	1122 bp downstream
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	847 bp upstream
Tssr107873	transcription start site region 107873	1990 bp upstream
Tssr107874	transcription start site region 107874	1783 bp upstream
Tssr107875	transcription start site region 107875	43 bp upstream
Tssr107876	transcription start site region 107876	1053 bp downstream
Tssr107877	transcription start site region 107877	1085 bp downstream