rs8243001 SNP Detail

Summary

• ID
  rs8243001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52170679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTGAGCA AAGAGCGGAG GCCTAGCTCC AAGGCCAATA
  GGCAGGGATG ACCGGCATAT TGCCTGTCTT TCTACAGAGG AAGTGTGGGA GAGGCTCAGC
  Y
  TGGGCAAGAG ATTCCCTGCA CCCAAGGTCC TTGCAAGACA CTCCTTACCT GTTAAGAGAA
  TGAGGGTGTC GTTCCCAGGA CCACGTGTGA GCCTTGAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss12737791	TCF7_1_JC4983_1	ROCHEBIO	RPAMM	f	SNP	T	C
ss323669949	CHEV_11_52093354	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs8243001					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52170679 () rs orientation: forward

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Rr386072	regulatory region 386072	1820 bp downstream
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	149 bp upstream
Tssr107875	transcription start site region 107875	741 bp upstream
Tssr107876	transcription start site region 107876	355 bp downstream
Tssr107877	transcription start site region 107877	387 bp downstream
Tssr107878	transcription start site region 107878	1924 bp downstream
Tssr107879	transcription start site region 107879	1981 bp downstream