rs8243017 SNP Detail

Summary

• ID
  rs8243017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52172885 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCTAC CTACTTGACC ACACAGGTGA
  Y
  GCTTGGACAA AAAAGGACTT CTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12737807	TCF7_1_JC4988_4	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T	C	C		T	C	C		C
ss132126793	ENSMUSSNP4978940	ENSEMBL	ENSEMBL_Sanger	r	SNP		A							G
ss323669951	CHEV_11_52095560	CHEVERUD	SCREENING_POP	r	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8243017					SNP	T	T	T	T	T	T	T	C	C	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52172885 () rs orientation: reverse

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Cpgi2853	CpG island 2853	317 bp proximal
Gm57351	predicted gene, 57351	1765 bp downstream
Rr369198	regulatory region 369198	621 bp upstream
Rr446835	regulatory region 446835	503 bp proximal
Rr446836	regulatory region 446836	1263 bp proximal
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101335	transcription start site region 101335	630 bp upstream
Tssr107876	transcription start site region 107876	1837 bp upstream
Tssr107877	transcription start site region 107877	1809 bp upstream
Tssr107878	transcription start site region 107878	274 bp upstream
Tssr107879	transcription start site region 107879	192 bp upstream
Tssr107880	transcription start site region 107880	237 bp downstream
Tssr107881	transcription start site region 107881	261 bp downstream
Tssr107882	transcription start site region 107882	506 bp downstream
Tssr107883	transcription start site region 107883	700 bp downstream
Tssr107884	transcription start site region 107884	745 bp downstream
Tssr107885	transcription start site region 107885	1172 bp downstream
Tssr107886	transcription start site region 107886	1190 bp downstream
Tssr107887	transcription start site region 107887	1244 bp downstream