rs8243035 SNP Detail

Summary

• ID
  rs8243035
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52171367 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTGCT TTGGGGGTCC TTCTCAAGCT
  M
  CAACAGATGA ATAACTACAC GTCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12737825	TCF7_1_JC4997_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8243035					SNP	A	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52171367 () rs orientation: reverse

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Cpgi2853	CpG island 2853	1835 bp proximal
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	507 bp downstream
Tssr107875	transcription start site region 107875	1429 bp upstream
Tssr107876	transcription start site region 107876	319 bp upstream
Tssr107877	transcription start site region 107877	291 bp upstream
Tssr107878	transcription start site region 107878	1236 bp downstream
Tssr107879	transcription start site region 107879	1293 bp downstream
Tssr107880	transcription start site region 107880	1755 bp downstream
Tssr107881	transcription start site region 107881	1779 bp downstream