rs8243036 SNP Detail

Summary

• ID
  rs8243036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52171318 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACTGT CCCCCTGCCC TCCTTCTCAG
  Y
  CACTGCCCTC ATCACTGCCT TCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12737826	TCF7_1_JC4997_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8243036					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52171318 () rs orientation: reverse

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Cpgi2853	CpG island 2853	1884 bp proximal
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	458 bp downstream
Tssr107875	transcription start site region 107875	1380 bp upstream
Tssr107876	transcription start site region 107876	270 bp upstream
Tssr107877	transcription start site region 107877	242 bp upstream
Tssr107878	transcription start site region 107878	1285 bp downstream
Tssr107879	transcription start site region 107879	1342 bp downstream
Tssr107880	transcription start site region 107880	1804 bp downstream
Tssr107881	transcription start site region 107881	1828 bp downstream