rs8243037 SNP Detail

Summary

• ID
  rs8243037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52171224 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCCAT GGTATCAGCT GCTGAGCAGA
  R
  TAAGAAACAA AGACAGAAGC AGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12737827	TCF7_1_JC4997_5	ROCHEBIO	RPAMM	f	SNP	A			A	A	A	A	A	A	G			A	G	G		G
ss38831385	mCV24824192	ABI	CRAMUS_MOUSE	r	SNP		T	T		T				T		C
ss132126789	ENSMUSSNP3031351	ENSEMBL	ENSEMBL_Sanger	r	SNP			T		T						C
ss323669950	CHEV_11_52093899	CHEVERUD	SCREENING_POP	r	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8243037					SNP	A	A	A	A	A	A	A	A	A	G	G	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52171224 () rs orientation: reverse

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Cpgi2853	CpG island 2853	1978 bp proximal
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	364 bp downstream
Tssr107875	transcription start site region 107875	1286 bp upstream
Tssr107876	transcription start site region 107876	176 bp upstream
Tssr107877	transcription start site region 107877	148 bp upstream
Tssr107878	transcription start site region 107878	1379 bp downstream
Tssr107879	transcription start site region 107879	1436 bp downstream
Tssr107880	transcription start site region 107880	1898 bp downstream
Tssr107881	transcription start site region 107881	1922 bp downstream