rs8243038 SNP Detail

Summary

• ID
  rs8243038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52171969 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGAA TGGTCTGTTT GTCTGTCTGC
  Y
  TTTCTGCTCT GGGATGGCTT CTGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12737828	TCF7_1_JC4998_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8243038					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52171969 () rs orientation: reverse

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Cpgi2853	CpG island 2853	1233 bp proximal
Rr369198	regulatory region 369198	1537 bp upstream
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	1109 bp downstream
Tssr101335	transcription start site region 101335	1546 bp upstream
Tssr107876	transcription start site region 107876	921 bp upstream
Tssr107877	transcription start site region 107877	893 bp upstream
Tssr107878	transcription start site region 107878	634 bp downstream
Tssr107879	transcription start site region 107879	691 bp downstream
Tssr107880	transcription start site region 107880	1153 bp downstream
Tssr107881	transcription start site region 107881	1177 bp downstream
Tssr107882	transcription start site region 107882	1422 bp downstream
Tssr107883	transcription start site region 107883	1616 bp downstream
Tssr107884	transcription start site region 107884	1661 bp downstream