rs8243045 SNP Detail

Summary

• ID
  rs8243045
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52171884 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGTAG ATGAGGTGCT TCTCTTGTAT
  R
  TAAAGAGGTG GCTGGCTCCT GACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12737835	TCF7_1_JC4998_8	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8243045					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52171884 () rs orientation: reverse

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Cpgi2853	CpG island 2853	1318 bp proximal
Rr369198	regulatory region 369198	1622 bp upstream
Rr446835	regulatory region 446835	1504 bp proximal
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	1024 bp downstream
Tssr101335	transcription start site region 101335	1631 bp upstream
Tssr107875	transcription start site region 107875	1946 bp upstream
Tssr107876	transcription start site region 107876	836 bp upstream
Tssr107877	transcription start site region 107877	808 bp upstream
Tssr107878	transcription start site region 107878	719 bp downstream
Tssr107879	transcription start site region 107879	776 bp downstream
Tssr107880	transcription start site region 107880	1238 bp downstream
Tssr107881	transcription start site region 107881	1262 bp downstream
Tssr107882	transcription start site region 107882	1507 bp downstream
Tssr107883	transcription start site region 107883	1701 bp downstream
Tssr107884	transcription start site region 107884	1746 bp downstream