rs8243307 SNP Detail

Summary

• ID
  rs8243307
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938390 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGTAATAATA ATGCCAGCCA
  TAGTGGCACA CACTTTTAAT CCCAACACTC AGGAGAAGTT AAGTTTCTCT TAGCTCAAGG
  CCAAGTAGCT TGGTCTACTC CGTGAATTCC AGCCCAACTA CATAGTAAAA CTAGCCTTAA
  AAAAAAAGGC ACAGGCAGAG GGAGATAACA AAAATGCCCA ACTCCTAGCT ACAGTAACTG
  W
  AGGAATTAAG ATAGAATCTG TAGTTTGTTT ATCATTATCG TGATGATCAA TGTCGTCTGA
  GGACCGGTAG AAGGAACCCA ATAGATGAAC AGTTCTTATA GCCATTGCTG TTAAGCAGTG
  GGACCCAAAA AAGAGGCTGT GGTTTTTCTG TGGTCACCCA TGACAGCAGT AAAAGTTACT
  TCAGAATTCC CCATTGCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	MSM/Ms
ss12738156	X13414_JC648_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	A	T	T
ss147249987	ENSMUSSNP7082388	ENSEMBL	ENSEMBL_Sanger	r	SNP		A							A		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	MSM/Ms
rs8243307					SNP	T	T	T	T	T	T	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938390 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	Intron
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1077 bp distal
Rr405669	regulatory region 405669	1470 bp downstream
Rr405670	regulatory region 405670	159 bp downstream
Rr405671	regulatory region 405671	338 bp upstream
Rr405672	regulatory region 405672	1194 bp upstream
Rr538682	regulatory region 538682	1460 bp distal
Tssr151326	transcription start site region 151326	1462 bp downstream
Tssr151327	transcription start site region 151327	1450 bp downstream
Tssr151328	transcription start site region 151328	301 bp downstream
Tssr151329	transcription start site region 151329	230 bp downstream
Tssr151330	transcription start site region 151330	624 bp upstream
Tssr151331	transcription start site region 151331	660 bp upstream
Tssr151332	transcription start site region 151332	1679 bp upstream
Tssr153492	transcription start site region 153492	1304 bp upstream