rs8243308 SNP Detail

Summary

• ID
  rs8243308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938388 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCAAC TCCTAGCTAC AGTAACTGTA
  R
  GAATTAAGAT AGAATCTGTA GTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	MSM/Ms
ss12738157	X13414_JC648_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	A	G	G
ss147249982	ENSMUSSNP7154798	ENSEMBL	ENSEMBL_Sanger	r	SNP		C							C		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	MSM/Ms
rs8243308					SNP	G	G	G	G	G	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938388 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1075 bp distal
Rr405669	regulatory region 405669	1468 bp downstream
Rr405670	regulatory region 405670	157 bp downstream
Rr405671	regulatory region 405671	340 bp upstream
Rr405672	regulatory region 405672	1196 bp upstream
Rr538682	regulatory region 538682	1458 bp distal
Tssr151326	transcription start site region 151326	1460 bp downstream
Tssr151327	transcription start site region 151327	1448 bp downstream
Tssr151328	transcription start site region 151328	299 bp downstream
Tssr151329	transcription start site region 151329	228 bp downstream
Tssr151330	transcription start site region 151330	626 bp upstream
Tssr151331	transcription start site region 151331	662 bp upstream
Tssr151332	transcription start site region 151332	1681 bp upstream
Tssr153492	transcription start site region 153492	1302 bp upstream