rs8243309 SNP Detail

Summary

• ID
  rs8243309
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938130 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCCAT TCGTGGTCAA TCTCCCAGAG
  K
  CTCTTTCAAA ACCTCTTTCT GCCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
ss12738162	X13414_JC648_8	ROCHEBIO	RPAMM	f	SNP	T	G	T	T	G	T	T	T	T		T
ss325640648	CHEV_18_60964712	CHEVERUD	SCREENING_POP	r	SNP										A		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
rs8243309					SNP	T	G	T	T	G	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938130 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	817 bp distal
Rr405669	regulatory region 405669	1210 bp downstream
Rr405670	regulatory region 405670	within coordinates
Rr405671	regulatory region 405671	598 bp upstream
Rr405672	regulatory region 405672	1454 bp upstream
Rr538682	regulatory region 538682	1200 bp distal
Tssr151326	transcription start site region 151326	1202 bp downstream
Tssr151327	transcription start site region 151327	1190 bp downstream
Tssr151328	transcription start site region 151328	41 bp downstream
Tssr151329	transcription start site region 151329	20 bp upstream
Tssr151330	transcription start site region 151330	884 bp upstream
Tssr151331	transcription start site region 151331	920 bp upstream
Tssr151332	transcription start site region 151332	1939 bp upstream
Tssr153492	transcription start site region 153492	1044 bp upstream